Note that I'm not a lithium expert, and what I write here is from information absorbed, not direct experience.
I think that *generally*, as long as a Li-Ion cell is a roughly similar capacity to the original, it should be OK with the original charger.
To get the same capacity out of 18650 cells, you'd be looking at 2 or 3 in parallel, and though in theory 3 cells in parallel should behave pretty much like one larger cell, I couldn't be sure if there are any subtle differences.
A good place to ask for advice is probably on candlepowerforums, in the 'Flashlight Electronics - Battery Included' section. As with any forum, there are differing levels of experience and self-confidence there, but given a little time, you should probably be able to spot who knows what they're talking about. Also, on Lithium topics, if someone says something daft, someone else will probably be fairly keen to correct them.
If you used a decently decriptive post title (like "Is it safe to replace one 5Ah lithium cell with 2/3x 18650s?"), you'd probably attract enough attention to get useful replies.
Are you sure that's 5.6V?
Lithiums generally come in multiples of nominal 3.7V cells (which vary between about 4.2V fully charged, and ~3V when flat. It's hard to see how to get 5.6V from that.
3.6V would seem more likely, and the fact that the Li-Ion worked with the same bulbs/LEDs as the nominal 3.6V NiCd/NiMH packs would lend weight to that.
In any case, I was under the impression from a conversation I had ages ago (with someone who I'd trust) that the cells in at least some packs were SAFT cells, something like the ones described at:
http://www.saftbatteries.com/Produit_MP_cell_range_301_69/Language/en-US/Default.aspx
(Though it's quite possible that models/capacities of previous models were different to the current ones.)
Even if that is the case, whether it's easy/possible to buy those cells in one-off quantities is another matter.